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I am commenting as an orthodox Jew. From everything I know of Chabad, they would be the last organization to do such a conversion. In my experience, if you are not Shabbas observant/Shomer Mitzvos, etc., it is not too likely that you will find an orthodox rabbi who will do the conversion. I'm not trying to discourage you from trying, by the way, but I just cannot imagine any orthodox rabbi converting a child when he knows that he will immediately be put in a situation which means he will be committing aveiras (sins).
If the baby has not yet been circumcized, there is a special prayer a mohel can say "for the sake of future conversion". That way, he will not have to even have a pinprick in the future. For this, you should try to find an orthodox mohel.
Best of luck and mazel tov on your son!
Yael
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